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2012
Common Motifs in Scientific Workflows: An Empirical Analysis, Garijo, Daniel, Alper Pinar, Belhajjame Khalid, Corcho Oscar, Gil Yolanda, and Goble Carole , Proceedings of the IEEE Conference on e-Science, Chicago, Illinois, (2012)
Similarity Assessment and Efficient Retrieval of Semantic Workflows, Bergmann, Ralph, and Gil Yolanda , To appear in the Information Systems Journal, (2012)
2011
Linked Data for Network Science, Groth, Paul T., and Gil Yolanda , First International Workshop on Linked Science at the International Semantic Web Conference (ISWC), Bonn, Germany, (2011)
Making Data Analysis Expertise Broadly Accessible through Workflows, Hauder, Matheus, Gil Yolanda, Sethi Ricky, Liu Yan, and Jo Hyunjoon , Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, (2011)
A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data, Garijo, Daniel, and Gil Yolanda , Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, (2011)
Retrieval of Semantic Workflows with Knowledge Intensive Similarity Metrics, Bergmann, Ralph, and Gil Yolanda , Proceedings of the Nineteenth International Conference on Case Based Reasoning (ICCBR), Greenwich, London, (2011)
A Semantic Framework for Automatic Generation of Computational Workflows Using Distributed Data and Component Catalogs, Gil, Yolanda, González-Calero Pedro A., Kim Jihie, Moody Joshua, and Ratnakar Varun , Journal of Experimental and Theoretical Artificial Intelligence, (2011)
Wings: Intelligent Workflow-Based Design of Computational Experiments, Gil, Yolanda, Ratnakar Varun, Kim Jihie, González-Calero Pedro A., Groth Paul T., Moody Joshua, and Deelman Ewa , IEEE Intelligent Systems, (2011)
2010
Parameterized Specification, Configuration, and Execution of Data-Intensive Scientific Workflows, Kumar, Vijay S., Kurç Tahsin M., Ratnakar Varun, Kim Jihie, Mehta Gaurang, Vahi Karan, Nelson Yoonju Lee, Sadayappan P., Deelman Ewa, Gil Yolanda, et al. , Cluster Computing Journal, Vol 13, (2010)
Principles for interactive acquisition and validation of workflows, Kim, Jihie, Gil Yolanda, and Spraragen Marc , J. Exp. Theor. Artif. Intell., Volume 22, Number 2, p.103-134, (2010)
Reasoning about the Appropriate Use of Private Data through Computational Workflows, Gil, Yolanda, and Fritz Christian , AAAI Spring Symposium on Privacy Management, Stanford, CA, March 23-25, (2010)
2009
Analyzing the Gap between Workflows and their Natural Language Descriptions, Groth, Paul T., and Gil Yolanda , 2009 IEEE Congress on Services, Part I, SERVICES I 2009, Los Angeles, CA, USA, July 6-10, 2009, p.299-305, (2009)
From data to knowledge to discoveries: Artificial intelligence and scientific workflows, Gil, Yolanda , Scientific Programming, Volume 17, Number 3, p.231-246, (2009)
HPC and Grid Computing for Integrative Biomedical Research, Kurç, Tahsin M., Hastings Shannon, Kumar Vijay S., Langella Stephen, Sharma Ashish, Pan Tony, Oster Scott, Ervin David, Permar Justin, Narayanan Sivaramakrishnan, et al. , IJHPCA, Volume 23, Number 3, p.252-264, (2009)
Scaffolding Instructions to Learn Procedures from Users, Groth, Paul T., and Gil Yolanda , AAAI Spring Symposium on Agents that Learn from Human Teachers, Stanford, CA, March 23-25, (2009)
A scientific workflow construction command line, Groth, Paul T., and Gil Yolanda , Proceedings of the 2009 International Conference on Intelligent User Interfaces, February 8-11, 2009, Sanibel Island, Florida, USA, p.445-450, (2009)
Expressive Reusable Workflow Templates, Gil, Yolanda, Groth Paul T., Ratnakar Varun, and Fritz Christian , Proceedings of the Fifth IEEE International Conference on e-Science, Oxford, UK, December 9-11, (2009)
From data to knowledge to discoveries: Artificial intelligence and scientific workflows, Gil, Yolanda , Scientific Programming, Volume 17, Number 3, p.231-246, (2009)
An integrated framework for performance-based optimization of scientific workflows, Kumar, Vijay S., Sadayappan P., Mehta Gaurang, Vahi Karan, Deelman Ewa, Ratnakar Varun, Kim Jihie, Gil Yolanda, Hall Mary W., Kurç Tahsin M., et al. , Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, HPDC 2009, Garching, Germany, June 11-13, 2009, p.177-186, (2009)
Workflow matching using semantic metadata, Gil, Yolanda, Kim Jihie, Puga Gonzalo Flórez, Ratnakar Varun, and González-Calero Pedro A. , Proceedings of the 5th International Conference on Knowledge Capture (K-CAP 2009), September 1-4, 2009, Redondo Beach, California, USA, p.121-128, (2009)
2008
Self-Configuring Applications for Heterogeneous Systems: Program Composition and Optimization Using Cognitive Techniques, Hall, Mary W., Gil Yolanda, and Lucas Robert , Proceedings of the IEEE, Special Issue on Cutting-Edge Computing: Using New Commodity Architectures, Volume 96, Issue 5, May, (2008)
Designing and parameterizing a workflow for optimization: A case study in biomedical imaging, Kumar, Vijay S., Hall Mary W., Kim Jihie, Gil Yolanda, Kurç Tahsin M., Deelman Ewa, Ratnakar Varun, and Saltz Joel H. , 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008, p.1-5, (2008)
Scientific Software as Workflows: From Discovery to Distribution, Woollard, David, Medvidovic Nenad, Gil Yolanda, and Mattmann Chris , IEEE Software, Volume 25, Number 4, p.37-43, (2008)
2007
On the Black Art of Designing Computational Workflows, Gil, Yolanda, González-Calero Pedro A., and Deelman Ewa , Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS'07), in conjunction with the IEEE International Symposium on High Performance Distributed Computing Monterrey, CA, June, (2007)
Examining the Challenges of Scientific Workflows, Gil, Yolanda, Deelman Ewa, Ellisman Mark H., Fahringer Thomas, Fox Geoffrey, Gannon Dennis, Goble Carole A., Livny Miron, Moreau Luc, and Myers Jim , IEEE Computer, Volume 40, Number 12, p.24-32, (2007)