Semantic Workflows for Cancer Clinical Omics

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  • The workflow that the users see has abstract classes for each step, which are automatically specialized to executable codes that use the latest versions. This way, the users interact with the same high-level workflow and do not have to manage version updates.
  • The versions of the different steps have to be consistent, which is captured in semantic constraints in the workflow. For example, all the data sources should be based on the same genomic assembly.
  • The system guides the user by identifying data sources that are consistent with each patient’s data.

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